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BMCBI
2011
12 years 11 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
CONCURRENCY
2002
116views more  CONCURRENCY 2002»
13 years 7 months ago
Parallel implementation of the fluid particle model for simulating complex fluids in the mesoscale
Dissipative particle dynamics (DPD) and its generalization - fluid particle model (FPM) - represent the "fluid particle" approach for simulating fluid-like behavior in t...
Krzysztof Boryczko, Witold Dzwinel, David A. Yuen
GRID
2003
Springer
14 years 20 days ago
Enabling the Co-Allocation of Grid Data Transfers
Data-sharing scientific communities use storage systems as distributed data stores by replicating content. In such highly replicated environments, a particular dataset can reside ...
Sudharshan Vazhkudai
HPDC
1999
IEEE
13 years 11 months ago
A Network-Aware Distributed Storage Cache for Data Intensive Environments
Modern scientific computing involves organizing, moving, visualizing, and analyzing massive amounts of data at multiple sites around the world. The technologies, the middleware se...
Brian Tierney, Jason Lee, Brian Crowley, Mason Hol...
ICDCS
1996
IEEE
13 years 11 months ago
Supporting a Flexible Parallel Programming Model on a Network of Workstations
We introduce a shared memory software prototype system for executing programs with nested parallelism on a network of workstations. This programming model exhibits a very convenie...
Shih-Chen Huang, Zvi M. Kedem