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» A Refactoring Approach to Parallelism
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IPPS
2009
IEEE
14 years 5 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
IPPS
2009
IEEE
14 years 5 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
ICCS
2009
Springer
14 years 5 months ago
Modular, Fine-Grained Adaptation of Parallel Programs
We present a modular approach to realizing fine-grained adaptation of program behavior in a parallel environment. Using a compositional framework based on function call intercepti...
Pilsung Kang 0002, Naresh K. C. Selvarasu, Naren R...
ICMCS
2007
IEEE
123views Multimedia» more  ICMCS 2007»
14 years 5 months ago
Efficient Parallelization of H.264 Decoding with Macro Block Level Scheduling
The H.264 decoder has a sequential, control intensive front end that makes it difficult to leverage the potential performance of emerging manycore processors. Preparsing is a fun...
Jike Chong, Nadathur Satish, Bryan C. Catanzaro, K...
ICPP
2007
IEEE
14 years 5 months ago
Parallel Algorithms for Bayesian Indoor Positioning Systems
We present two parallel algorithms and their Unified Parallel C implementations for Bayesian indoor positioning systems. Our approaches are founded on Markov Chain Monte Carlo si...
Konstantinos Kleisouris, Richard P. Martin