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BIBM
2010
IEEE
158views Bioinformatics» more  BIBM 2010»
13 years 5 months ago
Protein-protein interaction prediction via Collective Matrix Factorization
Abstract--Protein-protein interactions (PPI) play an important role in cellular processes and metabolic processes within a cell. An important task is to determine the existence of ...
Qian Xu, Evan Wei Xiang, Qiang Yang
PPOPP
1991
ACM
13 years 11 months ago
Coarse-Grain Parallel Programming in Jade
This paper presents Jade, a language which allows a programmer to easily express dynamic coarse-grain parallelism. Starting with a sequential program, a programmer augments those ...
Monica S. Lam, Martin C. Rinard
ECOOPW
1998
Springer
13 years 11 months ago
The Matrix Template Library: A Unifying Framework for Numerical Linear Algebra
Abstract. We present a uni ed approach for expressing high performance numerical linear algebra routines for a class of dense and sparse matrix formats and shapes. As with the Stan...
Jeremy G. Siek, Andrew Lumsdaine
LCPC
2007
Springer
14 years 1 months ago
Modeling Relations between Inputs and Dynamic Behavior for General Programs
Program dynamic optimization, adaptive to runtime behavior changes, has become increasingly important for both performance and energy savings. However, most runtime optimizations o...
Xipeng Shen, Feng Mao
IPPS
2009
IEEE
14 years 2 months ago
Annotation-based empirical performance tuning using Orio
In many scientific applications, significant time is spent tuning codes for a particular highperformance architecture. Tuning approaches range from the relatively nonintrusive (...
Albert Hartono, Boyana Norris, Ponnuswamy Sadayapp...