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» A Repulsive Clustering Algorithm for Gene Expression Data
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BMCBI
2004
117views more  BMCBI 2004»
13 years 9 months ago
Cancer characterization and feature set extraction by discriminative margin clustering
Background: A central challenge in the molecular diagnosis and treatment of cancer is to define a set of molecular features that, taken together, distinguish a given cancer, or ty...
Kamesh Munagala, Robert Tibshirani, Patrick O. Bro...
JMLR
2006
103views more  JMLR 2006»
13 years 9 months ago
MinReg: A Scalable Algorithm for Learning Parsimonious Regulatory Networks in Yeast and Mammals
In recent years, there has been a growing interest in applying Bayesian networks and their extensions to reconstruct regulatory networks from gene expression data. Since the gene ...
Dana Pe'er, Amos Tanay, Aviv Regev
DEXAW
2004
IEEE
167views Database» more  DEXAW 2004»
14 years 24 days ago
BioMap: Gene Family based Integration of Heterogeneous Biological Databases Using AutoMed Metadata
This paper presents an extensible architecture that can be used to support the integration of biological data sets. Biological research frequently requires this kind of synthesis....
Michael Maibaum, Galia Rimon, Christine A. Orengo,...
BIRTHDAY
2010
Springer
14 years 12 days ago
Clustering the Normalized Compression Distance for Influenza Virus Data
The present paper analyzes the usefulness of the normalized compression distance for the problem to cluster the hemagglutinin (HA) sequences of influenza virus data for the HA gene...
Kimihito Ito, Thomas Zeugmann, Yu Zhu
BMCBI
2008
124views more  BMCBI 2008»
13 years 9 months ago
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease
Background: Comparative analysis of expression microarray studies is difficult due to the large influence of technical factors on experimental outcome. Still, the identified diffe...
Rob Jelier, Peter A. C. 't Hoen, Ellen Sterrenburg...