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» A SAT-Based Approach to Multiple Sequence Alignment
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WABI
2007
Springer
14 years 3 months ago
Shotgun Protein Sequencing
Although snake venom proteins have been proven instrumental in the design of blood clotting and cytostatic breast cancer drugs, the main method in use to sequence these unknown pr...
Pavel A. Pevzner
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
14 years 3 months ago
Conserved RNA Pseudoknots
: Pseudoknots are essential for the functioning of many small RNA molecules. In addition, viral RNAs often exhibit pseudoknots that are required at various stages of the viral life...
C. Thurner, Ivo L. Hofacker, Peter F. Stadler
GCB
2003
Springer
105views Biometrics» more  GCB 2003»
14 years 3 months ago
In silico prediction of UTR repeats using clustered EST data
Clustering of EST data is a method for the non-redundant representation of an organisms transcriptome. During clustering of large amounts of EST data, usually some large clusters ...
Stefan A. Rensing, Daniel Lang, Ralf Reski
SAC
2009
ACM
14 years 4 months ago
A new protein motif extraction framework based on constrained co-clustering
Signal finding (pattern discovery) in biological sequences is a fundamental problem in both computer science and molecular biology. Many approaches have been proposed for extract...
Francesca Cordero, Alessia Visconti, Marco Botta
BMCBI
2008
114views more  BMCBI 2008»
13 years 10 months ago
Dinucleotide controlled null models for comparative RNA gene prediction
Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
Tanja Gesell, Stefan Washietl