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BMCBI
2008
110views more  BMCBI 2008»
13 years 8 months ago
Testing for treatment effects on gene ontology
In studies that use DNA arrays to assess changes in gene expression, it is preferable to measure the significance of treatment effects on a group of genes from a pathway or functi...
Taewon Lee, Varsha G. Desai, Cruz Velasco, Robert ...
WWW
2008
ACM
14 years 9 months ago
Learning deterministic regular expressions for the inference of schemas from XML data
Inferring an appropriate DTD or XML Schema Definition (XSD) for a given collection of XML documents essentially reduces to learning deterministic regular expressions from sets of ...
Geert Jan Bex, Wouter Gelade, Frank Neven, Stijn V...
BMCBI
2010
165views more  BMCBI 2010»
13 years 8 months ago
Filtering, FDR and power
Background: In high-dimensional data analysis such as differential gene expression analysis, people often use filtering methods like fold-change or variance filters in an attempt ...
Maarten van Iterson, Judith M. Boer, Renée ...
KDD
2007
ACM
227views Data Mining» more  KDD 2007»
14 years 9 months ago
Fast best-effort pattern matching in large attributed graphs
We focus on large graphs where nodes have attributes, such as a social network where the nodes are labelled with each person's job title. In such a setting, we want to find s...
Hanghang Tong, Christos Faloutsos, Brian Gallagher...
BMCBI
2010
170views more  BMCBI 2010»
13 years 8 months ago
Integrative analysis of gene expression and copy number alterations using canonical correlation analysis
Background: With the rapid development of new genetic measurement methods, several types of genetic alterations can be quantified in a high-throughput manner. While the initial fo...
Charlotte Soneson, Henrik Lilljebjörn, Thoas ...