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IPPS
2010
IEEE
13 years 5 months ago
Improving the performance of Uintah: A large-scale adaptive meshing computational framework
Abstract--Uintah is a highly parallel and adaptive multiphysics framework created by the Center for Simulation of Accidental Fires and Explosions in Utah. Uintah, which is built up...
Justin Luitjens, Martin Berzins
SAC
2009
ACM
14 years 2 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
PODC
2010
ACM
13 years 11 months ago
Brief announcement: exponential speed-up of local algorithms using non-local communication
We demonstrate how to leverage a system’s capability for allto-all communication to achieve an exponential speed-up of local algorithms despite bandwidth and memory restrictions...
Christoph Lenzen, Roger Wattenhofer
IPPS
2007
IEEE
14 years 1 months ago
Implementing Hirschberg's PRAM-Algorithm for Connected Components on a Global Cellular Automaton
The GCA (Global Cellular Automata) model consists of a collection of cells which change their states synchronously depending on the states of their neighbors like in the classical...
Johannes Jendrsczok, Rolf Hoffmann, Jörg Kell...
IPPS
2006
IEEE
14 years 1 months ago
Using virtual grids to simplify application scheduling
Users and developers of grid applications have access to increasing numbers of resources. While more resources generally mean higher capabilities for an application, they also rai...
Richard Y. Huang, Henri Casanova, Andrew A. Chien