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» A Sequence Alignment Model Based on the Averaged Perceptron
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ISMB
1996
13 years 9 months ago
The Megaprior Heuristic for Discovering Protein Sequence Patterns
Several computeralgorithms for discovering patterns in groups of protein sequences are in use that are basedon fitting the parametersof a statistical model to a group of related s...
Timothy L. Bailey, Michael Gribskov
BCB
2010
125views Bioinformatics» more  BCB 2010»
13 years 2 months ago
Protein structure alignment using elastic shape analysis
In this paper we present a method for flexible protein structure alignment based on elastic shape analysis of backbones, in a manner that can incorporate different characteristics...
Wei Liu, Anuj Srivastava, Jinfeng Zhang
ICDAR
2011
IEEE
12 years 7 months ago
HMM-Based Alignment of Inaccurate Transcriptions for Historical Documents
—For historical documents, available transcriptions typically are inaccurate when compared with the scanned document images. Not only the position of the words and sentences are ...
Andreas Fischer, Emanuel Indermühle, Volkmar ...
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
13 years 11 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
CF
2008
ACM
13 years 10 months ago
Cell-SWat: modeling and scheduling wavefront computations on the cell broadband engine
This paper contributes and evaluates a model and a methodology for implementing parallel wavefront algorithms on the Cell Broadband Engine. Wavefront algorithms are vital in sever...
Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dim...