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» A Simple Algorithm for Finding Exact Common Repeats
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WABI
2001
Springer
112views Bioinformatics» more  WABI 2001»
13 years 11 months ago
Finding an Optimal Inversion Median: Experimental Results
We derive a branch-and-bound algorithm to find an optimal inversion median of three signed permutations. The algorithm prunes to manageable size an extremely large search tree usi...
Adam C. Siepel, Bernard M. E. Moret
CPM
2006
Springer
95views Combinatorics» more  CPM 2006»
13 years 11 months ago
New Bounds for Motif Finding in Strong Instances
Many algorithms for motif finding that are commonly used in bioinformatics start by sampling r potential motif occurrences from n input sequences. The motif is derived from these s...
Brona Brejová, Daniel G. Brown, Ian M. Harr...
SDM
2009
SIAM
143views Data Mining» more  SDM 2009»
14 years 4 months ago
Finding Representative Association Rules from Large Rule Collections.
One of the most well-studied problems in data mining is computing association rules from large transactional databases. Often, the rule collections extracted from existing datamin...
Warren L. Davis IV, Peter Schwarz, Evimaria Terzi
FOCS
1999
IEEE
13 years 11 months ago
A Probabilistic Algorithm for k-SAT and Constraint Satisfaction Problems
We present a simple probabilistic algorithm for solving kSAT, and more generally, for solving constraint satisfaction problems (CSP). The algorithm follows a simple localsearch pa...
Uwe Schöning
GMP
2006
IEEE
127views Solid Modeling» more  GMP 2006»
14 years 1 months ago
Finding All Undercut-Free Parting Directions for Extrusions
For molding and casting processes, geometries that have undercut-free parting directions (UFPDs) are preferred for manufacturing. Identifying all UFPDs for arbitrary geometries at ...
Xiaorui Chen, Sara McMains