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BMCBI
2010
72views more  BMCBI 2010»
13 years 7 months ago
Phylogenetic representativeness: a new method for evaluating taxon sampling in evolutionary studies
Background: Taxon sampling is a major concern in phylogenetic studies. Incomplete, biased, or improper taxon sampling can lead to misleading results in reconstructing evolutionary...
Federico Plazzi, Ronald R. Ferrucci, Marco Passamo...
BMCBI
2006
137views more  BMCBI 2006»
13 years 7 months ago
A maximum likelihood framework for protein design
Background: The aim of protein design is to predict amino-acid sequences compatible with a given target structure. Traditionally envisioned as a purely thermodynamic question, thi...
Claudia L. Kleinman, Nicolas Rodrigue, Céci...
WALCOM
2010
IEEE
230views Algorithms» more  WALCOM 2010»
14 years 2 months ago
Comparing RNA Structures with Biologically Relevant Operations Cannot Be Done without Strong Combinatorial Restrictions
Abstract. Arc-annotated sequences are useful for representing structural information of RNAs and have been extensively used for comparing RNA structures in both terms of sequence a...
Guillaume Blin, Sylvie Hamel, Stéphane Vial...
SIGMOD
2007
ACM
161views Database» more  SIGMOD 2007»
14 years 7 months ago
Homeviews: peer-to-peer middleware for personal data sharing applications
This paper presents HomeViews, a peer-to-peer middleware system for building personal data management applications. HomeViews provides abstractions and services for data organizat...
Roxana Geambasu, Magdalena Balazinska, Steven D. G...
ASIAN
2004
Springer
150views Algorithms» more  ASIAN 2004»
14 years 1 months ago
Concurrent Constraint-Based Memory Machines: A Framework for Java Memory Models
A central problem in extending the von Neumann architecture to petaflop computers with millions of hardware threads and with a shared memory is defining the memory model [Lam79,...
Vijay A. Saraswat