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» A Systematic Analysis Patterns Specification
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NAACL
2007
13 years 11 months ago
Entity Extraction is a Boring Solved Problem - Or is it?
This paper presents empirical results that contradict the prevailing opinion that entity extraction is a boring solved problem. In particular, we consider data sets that resemble ...
Marc Vilain, Jennifer Su, Suzi Lubar
BMCBI
2010
152views more  BMCBI 2010»
13 years 10 months ago
Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks
Background: Microarray data discretization is a basic preprocess for many algorithms of gene regulatory network inference. Some common discretization methods in informatics are us...
Yong Li, Lili Liu, Xi Bai, Hua Cai, Wei Ji, Dianji...
BMCBI
2008
118views more  BMCBI 2008»
13 years 10 months ago
Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
Background: The detection of conserved motifs in promoters of orthologous genes (phylogenetic footprints) has become a common strategy to predict cis-acting regulatory elements. S...
Rekin's Janky, Jacques van Helden
BMCBI
2008
128views more  BMCBI 2008»
13 years 10 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
BMCBI
2008
137views more  BMCBI 2008»
13 years 10 months ago
Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data
Background: Non-sequence gene data (images, literature, etc.) can be found in many different public databases. Access to these data is mostly by text based methods using gene name...
Michael J. Gilchrist, Mikkel B. Christensen, Richa...