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» A Theoretical Analysis of Gene Selection
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BMCBI
2005
147views more  BMCBI 2005»
13 years 9 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
BMCBI
2006
111views more  BMCBI 2006»
13 years 9 months ago
Development of an unbiased statistical method for the analysis of unigenic evolution
Background: Unigenic evolution is a powerful genetic strategy involving random mutagenesis of a single gene product to delineate functionally important domains of a protein. This ...
Colleen D. Behrsin, Chris J. Brandl, David W. Litc...
BMCBI
2005
120views more  BMCBI 2005»
13 years 9 months ago
SpectralNET - an application for spectral graph analysis and visualization
Background: Graph theory provides a computational framework for modeling a variety of datasets including those emerging from genomics, proteomics, and chemical genetics. Networks ...
Joshua J. Forman, Paul A. Clemons, Stuart L. Schre...
BMCBI
2005
246views more  BMCBI 2005»
13 years 9 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
NIPS
2007
13 years 10 months ago
Discriminative K-means for Clustering
We present a theoretical study on the discriminative clustering framework, recently proposed for simultaneous subspace selection via linear discriminant analysis (LDA) and cluster...
Jieping Ye, Zheng Zhao, Mingrui Wu