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» A cluster validity framework for genome expression data
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NIPS
2008
13 years 10 months ago
Measures of Clustering Quality: A Working Set of Axioms for Clustering
Aiming towards the development of a general clustering theory, we discuss abstract axiomatization for clustering. In this respect, we follow up on the work of Kleinberg, ([1]) tha...
Shai Ben-David, Margareta Ackerman
ICASSP
2011
IEEE
13 years 7 days ago
Biological pathway inference using manifold embedding
Disease occurs due to aberrant modulation of biological pathways. Identification of activated gene pathways from gene expression data is an important problem. In this work, we de...
Arvind Rao, Alfred O. Hero
KDD
2009
ACM
249views Data Mining» more  KDD 2009»
14 years 9 months ago
Drosophila gene expression pattern annotation using sparse features and term-term interactions
The Drosophila gene expression pattern images document the spatial and temporal dynamics of gene expression and they are valuable tools for explicating the gene functions, interac...
Shuiwang Ji, Lei Yuan, Ying-Xin Li, Zhi-Hua Zhou, ...
SSDBM
2010
IEEE
153views Database» more  SSDBM 2010»
14 years 1 months ago
Scalable Clustering Algorithm for N-Body Simulations in a Shared-Nothing Cluster
Abstract. Scientists’ ability to generate and collect massive-scale datasets is increasing. As a result, constraints in data analysis capability rather than limitations in the av...
YongChul Kwon, Dylan Nunley, Jeffrey P. Gardner, M...
BMCBI
2006
116views more  BMCBI 2006»
13 years 8 months ago
Cluster analysis for DNA methylation profiles having a detection threshold
Background: DNA methylation, a molecular feature used to investigate tumor heterogeneity, can be measured on many genomic regions using the MethyLight technology. Due to the combi...
Paul Marjoram, Jing Chang, Peter W. Laird, Kimberl...