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CIBCB
2007
IEEE
13 years 11 months ago
Hybrid Architecture for Accelerating DNA Codeword Library Searching
-- A large and reliable DNA codeword library is the key to the success of DNA based computing. Searching for the set of reliable DNA codewords is an NP-hard problem, which can take...
Qinru Qiu, Daniel J. Burns, Qing Wu, Prakash Mukre
BIBE
2007
IEEE
126views Bioinformatics» more  BIBE 2007»
13 years 9 months ago
FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data
In this paper we describe our design and characterization of a co-processor architecture to accelerate median-based phylogenetic reconstruction for generearrangement data. Our curr...
Jason D. Bakos, Panormitis E. Elenis, Jijun Tang
JCM
2007
76views more  JCM 2007»
13 years 7 months ago
Scheduling Small Packets in IPSec Multi-accelerator Based Systems
—IPSec is a suite of protocols that adds security to communications at the IP level. Protocols within the IPSec suite make extensive use of cryptographic algorithms. Since these ...
Antonio Vincenzo Taddeo, Alberto Ferrante, Vincenz...
ICS
1997
Tsinghua U.
13 years 11 months ago
Optimizing Matrix Multiply Using PHiPAC: A Portable, High-Performance, ANSI C Coding Methodology
Modern microprocessors can achieve high performance on linear algebra kernels but this currently requires extensive machine-speci c hand tuning. We have developed a methodology wh...
Jeff Bilmes, Krste Asanovic, Chee-Whye Chin, James...
CLUSTER
2008
IEEE
14 years 2 months ago
Intelligent compilers
—The industry is now in agreement that the future of architecture design lies in multiple cores. As a consequence, all computer systems today, from embedded devices to petascale ...
John Cavazos