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» A cross-comparison of a large dataset of genes
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BMCBI
2005
116views more  BMCBI 2005»
13 years 7 months ago
Dynamic covariation between gene expression and proteome characteristics
Background: Cells react to changing intra- and extracellular signals by dynamically modulating complex biochemical networks. Cellular responses to extracellular signals lead to ch...
Mansour Taghavi Azar Sharabiani, Markku Siermala, ...
BMCBI
2010
118views more  BMCBI 2010»
13 years 7 months ago
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Background: To understand the evolutionary role of Lateral Gene Transfer (LGT), accurate methods are needed to identify transferred genes and infer their timing of acquisition. Ph...
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent...
BIOINFORMATICS
2006
120views more  BIOINFORMATICS 2006»
13 years 7 months ago
Comparison of Affymetrix GeneChip expression measures
Motivation: In the Affymetrix GeneChip system, preprocessing occurs before one obtains expression level measurements. Because the number of competing preprocessing methods was lar...
Rafael A. Irizarry, Zhijin Wu, Harris A. Jaffee
BMCBI
2010
122views more  BMCBI 2010»
13 years 2 months ago
Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PF
Background: A new paradigm of biological investigation takes advantage of technologies that produce large high throughput datasets, including genome sequences, interactions of pro...
Troy Hawkins, Meghana Chitale, Daisuke Kihara
ICTAI
2007
IEEE
14 years 1 months ago
Accurate Classification of SAGE Data Based on Frequent Patterns of Gene Expression
In this paper we present a method for classifying accurately SAGE (Serial Analysis of Gene Expression) data. The high dimensionality of the data, namely the large number of featur...
George Tzanis, Ioannis P. Vlahavas