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» A factor analysis model for functional genomics
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BMCBI
2010
139views more  BMCBI 2010»
13 years 8 months ago
TOPSAN: a collaborative annotation environment for structural genomics
Background: Many protein structures determined in high-throughput structural genomics centers, despite their significant novelty and importance, are available only as PDB depositi...
Dana Weekes, S. Sri Krishna, Constantina Bakolitsa...
BMCBI
2010
150views more  BMCBI 2010»
13 years 7 months ago
DeltaProt: a software toolbox for comparative genomics
Background: Statistical bioinformatics is the study of biological data sets obtained by new micro-technologies by means of proper statistical methods. For a better understanding o...
Steinar Thorvaldsen, Tor Flå, Nils Willassen
CORR
2010
Springer
175views Education» more  CORR 2010»
13 years 8 months ago
Incorporating Side Information in Probabilistic Matrix Factorization with Gaussian Processes
Probabilistic matrix factorization (PMF) is a powerful method for modeling data associated with pairwise relationships, finding use in collaborative filtering, computational biolo...
Ryan Prescott Adams, George E. Dahl, Iain Murray
TREC
2003
13 years 9 months ago
Identifying Gene Function Descriptions by Probability-based Sentence Selection
This paper proposes an approach to the secondary task in the TREC Genomics Track. We regard the task as identification of the sentences describing gene functions (i.e., GeneRIFs)...
Kazuhiro Seki, Nihar Sheth, Javed Mostafa
BMCBI
2006
87views more  BMCBI 2006»
13 years 8 months ago
Phylogeny based discovery of regulatory elements
Background: Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites;...
Jason Gertz, Justin C. Fay, Barak A. Cohen