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» A fast indexing approach for protein structure comparison
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EDBT
2006
ACM
145views Database» more  EDBT 2006»
14 years 7 months ago
Indexing Spatially Sensitive Distance Measures Using Multi-resolution Lower Bounds
Abstract. Comparison of images requires a distance metric that is sensitive to the spatial location of objects and features. Such sensitive distance measures can, however, be compu...
Vebjorn Ljosa, Arnab Bhattacharya, Ambuj K. Singh
BMCBI
2010
112views more  BMCBI 2010»
13 years 7 months ago
Computational identification of rare codons of Escherichia coli based on codon pairs preference
Background: Codon bias is believed to play an important role in the control of gene expression. In Escherichia coli, some rare codons, which can limit the expression level of exog...
Xianming Wu, Songfeng Wu, Dong Li, Jiyang Zhang, L...
CIKM
2006
Springer
13 years 11 months ago
Heuristic containment check of partial tree-pattern queries in the presence of index graphs
The wide adoption of XML has increased the interest of the database community on tree-structured data management techniques. Querying capabilities are provided through tree-patter...
Dimitri Theodoratos, Stefanos Souldatos, Theodore ...
BMCBI
2011
12 years 11 months ago
Structator: fast index-based search for RNA sequence-structure patterns
Background: The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching dat...
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebas...
BMCBI
2010
131views more  BMCBI 2010»
13 years 7 months ago
FACT: Functional annotation transfer between proteins with similar feature architectures
Background: The increasing number of sequenced genomes provides the basis for exploring the genetic and functional diversity within the tree of life. Only a tiny fraction of the e...
Tina Koestler, Arndt von Haeseler, Ingo Ebersberge...