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PADL
2005
Springer
14 years 2 months ago
Character-Based Cladistics and Answer Set Programming
We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to us...
Daniel R. Brooks, Esra Erdem, James W. Minett, Don...
BMCBI
2005
158views more  BMCBI 2005»
13 years 9 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
LCPC
1994
Springer
14 years 1 months ago
Optimizing Array Distributions in Data-Parallel Programs
Data parallel programs are sensitive to the distribution of data across processor nodes. We formulate the reduction of inter-node communication as an optimization on a colored gra...
Krishna Kunchithapadam, Barton P. Miller
FIDJI
2003
Springer
14 years 2 months ago
Hard Real-Time Implementation of Embedded Software in JAVA
The popular slogan ”write once, run anywhere” effectively renders the expressive capabilities of the Java programming framework for developing, deploying, and reusing target-i...
Jean-Pierre Talpin, Abdoulaye Gamatié, Davi...
IJHPCA
2007
114views more  IJHPCA 2007»
13 years 9 months ago
An Approach To Data Distributions in Chapel
A key characteristic of today’s high performance computing systems is a physically distributed memory, which makes the efficient management of locality essential for taking adv...
R. E. Diaconescu, Hans P. Zima