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GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
14 years 28 days ago
Evolving petri nets to represent metabolic pathways
Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
Jeremiah Nummela, Bryant A. Julstrom
ACL
2006
13 years 8 months ago
Semi-Supervised Conditional Random Fields for Improved Sequence Segmentation and Labeling
We present a new semi-supervised training procedure for conditional random fields (CRFs) that can be used to train sequence segmentors and labelers from a combination of labeled a...
Feng Jiao, Shaojun Wang, Chi-Hoon Lee, Russell Gre...
CORR
2007
Springer
147views Education» more  CORR 2007»
13 years 7 months ago
Decomposition During Search for Propagation-Based Constraint Solvers
Abstract. We describe decomposition during search (DDS), an integration of And/Or tree search into propagation-based constraint solvers. The presented search algorithm dynamically ...
Martin Mann, Guido Tack, Sebastian Will
BMCBI
2007
102views more  BMCBI 2007»
13 years 7 months ago
A comprehensive system for evaluation of remote sequence similarity detection
Background: Accurate and sensitive performance evaluation is crucial for both effective development of better structure prediction methods based on sequence similarity, and for th...
Yuan Qi, Ruslan Sadreyev, Yong Wang, Bong-Hyun Kim...
BIOINFORMATICS
2011
13 years 2 months ago
Integrative network alignment reveals large regions of global network similarity in yeast and human
Motivation: High-throughput methods for detecting molecular interactions have produced large sets of biological network data with much more yet to come. Analogous to sequence alig...
Oleksii Kuchaiev, Natasa Przulj