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BMCBI
2004
174views more  BMCBI 2004»
13 years 7 months ago
Implications for domain fusion protein-protein interactions based on structural information
Background: Several in silico methods exist that were developed to predict protein interactions from the copious amount of genomic and proteomic data. One of these methods is Doma...
Jer-Ming Chia, Prasanna R. Kolatkar
ISDA
2009
IEEE
14 years 2 months ago
MAHATMA: A Genetic Programming-Based Tool for Protein Classification
Proteins can be grouped into families according to some features such as hydrophobicity, composition or structure, aiming to establish common biological functions. This paper pres...
Denise Fukumi Tsunoda, Alex Alves Freitas, Heitor ...
CDES
2006
97views Hardware» more  CDES 2006»
13 years 8 months ago
Protein Secondary Structure Prediction Accuracy versus Reduction Methods
Predicting protein secondary structure is a key step in determining the 3D structure of a protein that determines its function. The Dictionary of Secondary Structure of Proteins (...
Saad Osman Abdalla Subair, Safaai Deris
ICEIS
2003
IEEE
14 years 21 days ago
The Protein Structure Prediction Module of the Prot-Grid Information System
: In this work, we describe the protein secondary structure prediction module of a distributed bio-informatics system. Protein databases contain over a million of sequenced protein...
Dimitrios Vogiatzis, Dimitrios Frosyniotis, George...
BMCBI
2008
128views more  BMCBI 2008»
13 years 7 months ago
Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
Background: Amino acid sequence probability distributions, or profiles, have been used successfully to predict secondary structure and local structure in proteins. Profile models ...
Christopher Bystroff, Bobbie-Jo M. Webb-Robertson