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DATESO
2007
157views Database» more  DATESO 2007»
13 years 9 months ago
Index-Based Approach to Similarity Search in Protein and Nucleotide Databases
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
David Hoksza, Tomás Skopal
CVPR
2008
IEEE
13 years 7 months ago
Globally optimal surface segmentation using regional properties of segmented objects
Efficient segmentation of globally optimal surfaces in volumetric images is a central problem in many medical image analysis applications. Intra-class variance has been successful...
Xin Dou, Xiaodong Wu, Andreas Wahle, Milan Sonka
BMCBI
2006
120views more  BMCBI 2006»
13 years 7 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
GECCO
2008
Springer
164views Optimization» more  GECCO 2008»
13 years 8 months ago
Genetic algorithms with local search optimization for protein structure prediction problem
This paper presents a new Genetic Algorithm for Protein Structure Prediction problem in both 2D and 3D hydrophobichydrophilic lattice models, introduced in [1]. Our algorithm evol...
Igor Berenboym, Mireille Avigal
CVPR
2010
IEEE
13 years 9 months ago
Simultaneous Searching of Globally Optimal Interacting Surfaces with Shape Priors
Multiple surface searching with only image intensity information is a difficult job in the presence of high noise and weak edges. We present in this paper a novel method for global...
Qi Song, Xiaodong Wu, Yunlong Liu, Mona Garvin, Mi...