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» A graph-theoretic data model for genome mapping databases
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WISE
2003
Springer
14 years 1 months ago
Using a Layered Approach for Interoperability on the Semantic Web
In this paper, we further develop a proposed layered approach for the Semantic Web. Our objective is to build a specific solution to the problem of providing data interoperability...
Isabel F. Cruz, Huiyong Xiao
ALMOB
2006
138views more  ALMOB 2006»
13 years 7 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
POPL
2008
ACM
14 years 8 months ago
Boomerang: resourceful lenses for string data
A lens is a bidirectional program. When read from left to right, it denotes an ordinary function that maps inputs to outputs. When read from right to left, it denotes an "upd...
Aaron Bohannon, J. Nathan Foster, Benjamin C. Pier...
BMCBI
2011
12 years 11 months ago
PRIN, a predicted rice interactome network
Background: Protein-protein interactions play a fundamental role in elucidating the molecular mechanisms of biomolecular function, signal transductions and metabolic pathways of l...
Haibin Gu, Pengcheng Zhu, Yinming Jiao, Yijun Meng...
BMCBI
2004
131views more  BMCBI 2004»
13 years 7 months ago
Alternative mapping of probes to genes for Affymetrix chips
Background: Short oligonucleotide arrays have several probes measuring the expression level of each target transcript. Therefore the selection of probes is a key component for the...
Laurent Gautier, Morten Møller, Lennart Fri...