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» A graph-theoretic data model for genome mapping databases
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BMCBI
2006
86views more  BMCBI 2006»
13 years 9 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson
NAR
2008
114views more  NAR 2008»
13 years 9 months ago
ENDEAVOUR update: a web resource for gene prioritization in multiple species
ENDEAVOUR (http://www.esat.kuleuven.be/endeavour web; this web site is free and open to all users and there is no login requirement) is a web resource for the prioritization of ca...
Léon-Charles Tranchevent, Roland Barriot, S...
BMCBI
2005
109views more  BMCBI 2005»
13 years 9 months ago
Automation of gene assignments to metabolic pathways using high-throughput expression data
Background: Accurate assignment of genes to pathways is essential in order to understand the functional role of genes and to map the existing pathways in a given genome. Existing ...
Liviu Popescu, Golan Yona
ICDE
1995
IEEE
101views Database» more  ICDE 1995»
14 years 10 months ago
Two-Level Caching of Composite Object Views of Relational Databases
We describe a two-level client-side cache for composite objects mapped as views of a relational database. A semantic model, the Structural Model, is used to specify joins on the r...
Catherine Hamon, Arthur M. Keller
VLDB
1994
ACM
126views Database» more  VLDB 1994»
14 years 1 months ago
Building a Laboratory Information System Around a C++-Based Object-Oriented DBMS
MapBase is a laboratory information system that has been supporting a high-throughput genome-mapping operation for the last three years. We chose to build MapBase around a C++-bas...
Nathan Goodman, Steve Rozen, Lincoln Stein