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    BIOINFORMATICS
    2005
    72views more  BIOINFORMATICS 2005»
    Use of within-array replicate spots for assessing differential expression in microarray experiments
    13 years 9 months ago
    Use of within-array replicate spots for assessing differential expression in microarray experiments
    Download  www.statsci.org
    Motivation. Spotted arrays are often printed with probes in duplicate or triplicate, but current methods for assessing differential expression are not able to make full use of the...
    Gordon K. Smyth, Joëlle Michaud, Hamish S. Sc...
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    BMCBI
    2005
    107views more  BMCBI 2005»
    Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach
    13 years 9 months ago
    Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach
    Download  www.biomedcentral.com
    Background: In testing for differential gene expression involving multiple serial analysis of gene expression (SAGE) libraries, it is critical to account for both between and with...
    Jun Lu, John K. Tomfohr, Thomas B. Kepler
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    BMCBI
    2005
    107views more  BMCBI 2005»
    An edit script for taxonomic classifications
    13 years 9 months ago
    An edit script for taxonomic classifications
    Download  taxonomy.zoology.gla.ac.uk
    Abstract. Taxonomy provides one of the most powerful ways to navigate sequence data bases but currently, users are forced to formulate queries according to a single taxonomic class...
    Roderic D. M. Page, Gabriel Valiente
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    BMCBI
    2005
    90views more  BMCBI 2005»
    An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reaction
    13 years 9 months ago
    An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reaction
    Download  www.biomedcentral.com
    Background: Determination and quantification of nucleic acid components in a mixture is usually accomplished by microarray approaches, where the mixtures are hybridized against sp...
    Alexander E. Pozhitkov, Kathryn Stemshorn, Diethar...
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    BMCBI
    2005
    100views more  BMCBI 2005»
    Evolutionary models for insertions and deletions in a probabilistic modeling framework
    13 years 9 months ago
    Evolutionary models for insertions and deletions in a probabilistic modeling framework
    Download  www.biomedcentral.com
    Background: Probabilistic models for sequence comparison (such as hidden Markov models and pair hidden Markov models for proteins and mRNAs, or their context-free grammar counterp...
    Elena Rivas
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