50 search results - page 5 / 10 » A multiple layer model to compare RNA secondary structures |
BMCBI
2006
13 years 7 months ago
2006
Background: In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses an...
AAIM
2007
Springer
2007
Springer
Improved Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
14 years 1 months ago
We study three closely related problems motivated by the prediction of RNA secondary structures with arbitrary pseudoknots: the MAXIMUM BASE PAIR STACKINGS problem proposed by Ieon...
SAC
2009
ACM
14 years 2 months ago
2009
ACM
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
BMCBI
2008
13 years 7 months ago
2008
Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
BMCBI
2005
13 years 7 months ago
2005
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...