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    BMCBI
    2008
    145views more  BMCBI 2008»
    Directed acyclic graph kernels for structural RNA analysis
    13 years 7 months ago
    Directed acyclic graph kernels for structural RNA analysis
    Download  www.biomedcentral.com
    Background: Recent discoveries of a large variety of important roles for non-coding RNAs (ncRNAs) have been reported by numerous researchers. In order to analyze ncRNAs by kernel ...
    Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubum...
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    JCB
    2007
    97views more  JCB 2007»
    Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and Applications
    13 years 7 months ago
    Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and Applications
    Download  www.cs.ubc.ca
    Accurate prediction of pseudoknotted nucleic acid secondary structure is an important computational challenge. Prediction algorithms based on dynamic programming aim to find a st...
    Baharak Rastegari, Anne Condon
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    WABI
    2005
    Springer
    120views Bioinformatics» more  WABI 2005»
    Multiple Structural RNA Alignment with Lagrangian Relaxation
    14 years 1 months ago
    Multiple Structural RNA Alignment with Lagrangian Relaxation
    Download  www.inf.fu-berlin.de
    In contrast to proteins, many classes of functionally related RNA molecules show a rather weak sequence conservation but instead a fairly well conserved secondary structure. Hence ...
    Markus Bauer, Gunnar W. Klau, Knut Reinert
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    BMCBI
    2008
    114views more  BMCBI 2008»
    Dinucleotide controlled null models for comparative RNA gene prediction
    13 years 7 months ago
    Dinucleotide controlled null models for comparative RNA gene prediction
    Download  www.tbi.univie.ac.at
    Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
    Tanja Gesell, Stefan Washietl
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    BMCBI
    2005
    125views more  BMCBI 2005»
    Multiple sequence alignments of partially coding nucleic acid sequences
    13 years 7 months ago
    Multiple sequence alignments of partially coding nucleic acid sequences
    Download  www.bioinf.uni-leipzig.de
    Background: High quality sequence alignments of RNA and DNA sequences are an important prerequisite for the comparative analysis of genomic sequence data. Nucleic acid sequences, ...
    Roman R. Stocsits, Ivo L. Hofacker, Claudia Fried,...
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