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» A new approach to fragment assembly in DNA sequencing
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BMCBI
2004
150views more  BMCBI 2004»
13 years 6 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
MT
2010
100views more  MT 2010»
13 years 5 months ago
Exploiting syntactic relationships in a phrase-based decoder: an exploration
Phrase-based decoding is conceptually simple and straightforward to implement, at the cost of drastically oversimplified reordering models. Syntactically aware models make it pos...
Tim Hunter, Philip Resnik
CSC
2006
13 years 8 months ago
B-Splines for Genomic Signatures
- A variety of data analysis concerned with genome sequences support the proposal that each living organism owns a genomic signature. Classical approaches to the genomic signature ...
Gennaro Iaccarino, Filomena de Santis
BMCBI
2006
161views more  BMCBI 2006»
13 years 6 months ago
A novel approach to phylogenetic tree construction using stochastic optimization and clustering
Background: The problem of inferring the evolutionary history and constructing the phylogenetic tree with high performance has become one of the major problems in computational bi...
Ling Qin, Yixin Chen, Yi Pan, Ling Chen
BMCBI
2005
117views more  BMCBI 2005»
13 years 6 months ago
Differentiation of regions with atypical oligonucleotide composition in bacterial genomes
Background: Complete sequencing of bacterial genomes has become a common technique of present day microbiology. Thereafter, data mining in the complete sequence is an essential st...
Oleg N. Reva, Burkhard Tümmler