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BMCBI
2010
121views more  BMCBI 2010»
13 years 5 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
CSB
2004
IEEE
110views Bioinformatics» more  CSB 2004»
13 years 11 months ago
SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error
For the identification of novel proteins using MS/MS, de novo sequencing software computes one or several possible amino acid sequences (called sequence tags) for each MS/MS spect...
Yonghua Han, Bin Ma, Kaizhong Zhang
PAM
2012
Springer
12 years 3 months ago
A Sequence-Oriented Stream Warehouse Paradigm for Network Monitoring Applications
Network administrators are faced with the increasingly challenging task of monitoring their network’s health in real time, drawing upon diverse and voluminous measurement data fe...
Lukasz Golab, Theodore Johnson, Subhabrata Sen, Je...
EMNLP
2010
13 years 5 months ago
A New Approach to Lexical Disambiguation of Arabic Text
We describe a model for the lexical analysis of Arabic text, using the lists of alternatives supplied by a broad-coverage morphological analyzer, SAMA, which include stable lemma ...
Rushin Shah, Paramveer S. Dhillon, Mark Liberman, ...
RECOMB
2005
Springer
14 years 8 months ago
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
Abstract. Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e. segmenta...
Yan Liu, Jaime G. Carbonell, Peter Weigele, Vanath...