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BIBE
2010
IEEE
148views Bioinformatics» more  BIBE 2010»
13 years 2 months ago
Prediction of Gene Ontology Annotations Based on Gene Functional Clustering
We propose an algorithm that predicts potentially missing Gene Ontology annotations, in order to speed up the time-consuming annotation curation process. The proposed method extend...
Marco Tagliasacchi, Roberto Sarati, Marco Masserol...
IJCNN
2006
IEEE
14 years 1 months ago
Kernel Based Functional Gene Grouping
Abstract— During the last years, high throughput experiments have become very popular. During the analysis of such data the need for a functional grouping of genes arises. In thi...
Holger Fröhlich, Nora Speer, Christian Spieth...
BMCBI
2010
178views more  BMCBI 2010»
13 years 7 months ago
An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology
Background: Semantic similarity measures are useful to assess the physiological relevance of protein-protein interactions (PPIs). They quantify similarity between proteins based o...
Shobhit Jain, Gary D. Bader
BMCBI
2006
167views more  BMCBI 2006»
13 years 7 months ago
GOurmet: A tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributi
Background: The ever-expanding population of gene expression profiles (EPs) from specified cells and tissues under a variety of experimental conditions is an important but difficu...
Jason M. Doherty, Lynn K. Carmichael, Jason C. Mil...
BMCBI
2008
158views more  BMCBI 2008»
13 years 7 months ago
Metrics for GO based protein semantic similarity: a systematic evaluation
Background: Several semantic similarity measures have been applied to gene products annotated with Gene Ontology terms, providing a basis for their functional comparison. However,...
Catia Pesquita, Daniel Faria, Hugo P. Bastos, Ant&...