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BMCBI
2010
95views more  BMCBI 2010»
13 years 7 months ago
An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data
Background: ChIP-Seq, which combines chromatin immunoprecipitation (ChIP) with high-throughput massively parallel sequencing, is increasingly being used for identification of prot...
Congmao Wang, Jie Xu, Dasheng Zhang, Zoe A. Wilson...
PPOPP
2006
ACM
14 years 1 months ago
Exploiting distributed version concurrency in a transactional memory cluster
We investigate a transactional memory runtime system providing scaling and strong consistency for generic C++ and SQL applications on commodity clusters. We introduce a novel page...
Kaloian Manassiev, Madalin Mihailescu, Cristiana A...
PPOPP
2006
ACM
14 years 1 months ago
On-line automated performance diagnosis on thousands of processes
Performance analysis tools are critical for the effective use of large parallel computing resources, but existing tools have failed to address three problems that limit their scal...
Philip C. Roth, Barton P. Miller
GRID
2007
Springer
13 years 11 months ago
Global-scale peer-to-peer file services with DFS
The global inter-networking infrastructure that has become essential for contemporary day-to-day computing and communication tasks, has also enabled the deployment of several large...
Antony Chazapis, Georgios Tsoukalas, Georgios Veri...
ICPP
2008
IEEE
14 years 1 months ago
Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine
JPEG2000 is the latest still image coding standard from the JPEG committee, which adopts new algorithms such as Embedded Block Coding with Optimized Truncation (EBCOT) and Discret...
Seunghwa Kang, David A. Bader