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ICPPW
2009
IEEE
13 years 5 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
PLDI
2012
ACM
11 years 10 months ago
Scalable and precise dynamic datarace detection for structured parallelism
Existing dynamic race detectors suffer from at least one of the following three limitations: (i) space overhead per memory location grows linearly with the number of parallel thre...
Raghavan Raman, Jisheng Zhao, Vivek Sarkar, Martin...
DAGSTUHL
2007
13 years 9 months ago
Parallelism through Digital Circuit Design
Abstract. Two ways to exploit chips with a very large number of transistors are multicore processors and programmable logic chips. Some data parallel algorithms can be executed eï¬...
John O'Donnell
PLDI
1993
ACM
13 years 12 months ago
Global Optimizations for Parallelism and Locality on Scalable Parallel Machines
Data locality is critical to achievinghigh performance on large-scale parallel machines. Non-local data accesses result in communication that can greatly impact performance. Thus ...
Jennifer-Ann M. Anderson, Monica S. Lam
HIPC
2009
Springer
13 years 5 months ago
Highly scalable algorithm for distributed real-time text indexing
Stream computing research is moving from terascale to petascale levels. It aims to rapidly analyze data as it streams in from many sources and make decisions with high speed and a...
Ankur Narang, Vikas Agarwal, Monu Kedia, Vijay K. ...