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CORR
2007
Springer
141views Education» more  CORR 2007»
13 years 8 months ago
A Class of Parallel Tiled Linear Algebra Algorithms for Multicore Architectures
As multicore systems continue to gain ground in the High Performance Computing world, linear algebra algorithms have to be reformulated or new algorithms have to be developed in or...
Alfredo Buttari, Julien Langou, Jakub Kurzak, Jack...
JCC
2007
151views more  JCC 2007»
13 years 7 months ago
New parallel algorithm for MP2 energy gradient calculations
Abstract: A new parallel algorithm has been developed for calculating the analytic energy derivatives of full accuracy second order Møller-Plesset perturbation theory (MP2). Its m...
Kazuya Ishimura, Peter Pulay, Shigeru Nagase
SPAA
2004
ACM
14 years 1 months ago
Online algorithms for prefetching and caching on parallel disks
Parallel disks provide a cost effective way of speeding up I/Os in applications that work with large amounts of data. The main challenge is to achieve as much parallelism as poss...
Rahul Shah, Peter J. Varman, Jeffrey Scott Vitter
BMCBI
2010
189views more  BMCBI 2010»
13 years 8 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
PPOPP
1997
ACM
14 years 3 days ago
LoPC: Modeling Contention in Parallel Algorithms
Parallel algorithm designers need computational models that take first order system costs into account, but are also simple enough to use in practice. This paper introduces the L...
Matthew Frank, Anant Agarwal, Mary K. Vernon