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IPPS
1997
IEEE
14 years 4 days ago
Time-Stamping Algorithms for Parallelization of Loops at Run-Time
In this paper, we present two new run-time algorithms for the parallelization of loops that have indirect access patterns. The algorithms can handle any type of loop-carried depen...
Cheng-Zhong Xu, Vipin Chaudhary
EUROPAR
2007
Springer
14 years 2 months ago
Hirschberg's Algorithm on a GCA and Its Parallel Hardware Implementation
We present in detail a GCA (Global Cellular Automaton) algorithm with 3n cells for Hirschberg’s algorithm which determines the connected components of a n-node undirected graph w...
Johannes Jendrsczok, Rolf Hoffmann, Jörg Kell...
IPPS
2008
IEEE
14 years 2 months ago
Parallelized preprocessing algorithms for high-density oligonucleotide arrays
Studies of gene expression using high-density oligonucleotide microarrays have become standard in a variety of biological contexts. The data recorded using the microarray techniqu...
Markus Schmidberger, Ulrich Mansmann
ICPPW
2006
IEEE
14 years 2 months ago
Dynamic Algorithm Selection in Parallel GAMESS Calculations
Applications augmented with adaptive capabilities are becoming common in parallel computing environments which share resources such as main memory, network, or disk I/O. For large...
Nurzhan Ustemirov, Masha Sosonkina, Mark S. Gordon...
ICPP
2006
IEEE
14 years 2 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal