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BMCBI
2004
96views more  BMCBI 2004»
13 years 7 months ago
A hybrid clustering approach to recognition of protein families in 114 microbial genomes
Background: Grouping proteins into sequence-based clusters is a fundamental step in many bioinformatic analyses (e.g., homology-based prediction of structure or function). Standar...
Timothy J. Harlow, J. Peter Gogarten, Mark A. Raga...
CCGRID
2007
IEEE
14 years 2 months ago
Performance Evaluation in Grid Computing: A Modeling and Prediction Perspective
Experimental performance studies on computer systems, including Grids, require deep understandings on their workload characteristics. The need arises from two important and closel...
Hui Li
IJHPCA
2008
131views more  IJHPCA 2008»
13 years 7 months ago
De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers
We present a de novo hierarchical simulation framework for first-principles based predictive simulations of materials and their validation on high-end parallel supercomputers and ...
Aiichiro Nakano, Rajiv K. Kalia, Ken-ichi Nomura, ...
BMCBI
2006
98views more  BMCBI 2006»
13 years 8 months ago
Optimised amino acid specific weighting factors for unbound protein docking
Background: One of the most challenging aspects of protein-protein docking is the inclusion of flexibility into the docking procedure. We developed a postfilter where the grid-rep...
Philipp Heuser, Dietmar Schomburg
IPPS
2007
IEEE
14 years 2 months ago
Experiments with a Software Component Enabling NetSolve with Direct Communications in a Non-Intrusive and Incremental Way
The paper presents a software component that enables NetSolve with direct communications between servers in a non-intrusive and incremental way. Non-intrusiveness means that the s...
Xin Zuo, Alexey L. Lastovetsky