241 search results - page 23 / 49 » A polyhedral approach to RNA sequence structure alignment |
BMCBI
2005
13 years 8 months ago
2005
Background: Currently available methods to predict splice sites are mainly based on the independent and progressive alignment of transcript data (mostly ESTs) to the genomic seque...
WABI
2010
Springer
13 years 7 months ago
2010
Springer
Background: Although many RNA molecules contain pseudoknots, computational prediction of pseudoknotted RNA structure is still in its infancy due to high running time and space con...
BMCBI
2011
13 years 10 days ago
2011
Background: The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching dat...
WG
2005
Springer
14 years 2 months ago
2005
Springer
Abstract. In the context of protein engineering, we consider the problem of computing an mRNA sequence of maximal codon-wise similarity to a given mRNA (and consequently, to a give...
GCB
2005
Springer
14 years 2 months ago
2005
Springer
We present an extension of the standard partition function approach to RNA secondary structures that computes the probabilities Pu[i, j] that a sequence interval [i, j] is unpaired...