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    » A polyhedral approach to RNA sequence structure alignment
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    ISBI
    2006
    IEEE
    128views Medical Imaging» more  ISBI 2006»
    Nonuniform temporal alignment of slice sequences for four-dimensional imaging of cyclically deforming embryonic structures
    14 years 9 months ago
    Nonuniform temporal alignment of slice sequences for four-dimensional imaging of cyclically deforming embryonic structures
    Download  www.its.caltech.edu
    The temporal alignment of nongated slice-sequences acquired at different axial positions in the living embryonic zebrafish heart permits the reconstruction of dynamic, three-dimen...
    Michael Liebling, Julien Vermot, Arian S. Forouhar...
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    AINA
    2006
    IEEE
    165views Computer Networks» more  AINA 2006»
    Partitioned optimization algorithms for multiple sequence alignment
    14 years 2 months ago
    Partitioned optimization algorithms for multiple sequence alignment
    Download  www.cse.wustl.edu
    Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly impr...
    Yixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen
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    BMCBI
    2008
    123views more  BMCBI 2008»
    Shape based indexing for faster search of RNA family databases
    13 years 8 months ago
    Shape based indexing for faster search of RNA family databases
    Download  www.biomedcentral.com
    Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
    Stefan Janssen, Jens Reeder, Robert Giegerich
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    SCFBM
    2008
    131views more  SCFBM 2008»
    FASH: A web application for nucleotides sequence search
    13 years 8 months ago
    FASH: A web application for nucleotides sequence search
    Download  www.cs.bgu.ac.il
    : FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a ...
    Isana Veksler-Lublinsky, Danny Barash, Chai Avisar...
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    BMCBI
    2008
    136views more  BMCBI 2008»
    An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptim
    13 years 8 months ago
    An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptim
    Download  www.biomedcentral.com
    Background: RNAmute is an interactive Java application which, given an RNA sequence, calculates the secondary structure of all single point mutations and organizes them into categ...
    Alexander Churkin, Danny Barash
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