241 search results - page 5 / 49 » A polyhedral approach to RNA sequence structure alignment |
BMCBI
2008
13 years 8 months ago
2008
Background: The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy str...
BMCBI
2010
13 years 8 months ago
2010
Background: In recent years, the number of available RNA structures has rapidly grown reflecting the increased interest on RNA biology. Similarly to the studies carried out two de...
BMCBI
2004
13 years 8 months ago
2004
Background: For the purposes of finding and aligning noncoding RNA gene- and cis-regulatory elements in multiple-genome datasets, it is useful to be able to derive multi-sequence ...
GCB
2004
Springer
14 years 2 months ago
2004
Springer
: Pseudoknots are essential for the functioning of many small RNA molecules. In addition, viral RNAs often exhibit pseudoknots that are required at various stages of the viral life...
ISMB
1997
13 years 10 months ago
1997
Seq7 is a newprogramfor generating multiple structure-based alignments of RNAsequences. Byusing a variant of Dijkstra’s algorithm to find the shortest path through a specially c...