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HYBRID
2001
Springer
14 years 1 months ago
Hybrid Modeling and Simulation of Biomolecular Networks
Abstract. In a biological cell, cellular functions and the genetic regulatory apparatus are implemented and controlled by a network of chemical reactions in which regulatory protei...
Rajeev Alur, Calin Belta, Franjo Ivancic
ATAL
2009
Springer
14 years 3 months ago
Stigmergic reasoning over hierarchical task networks
Stigmergy is usually associated with semantically simple problems such as routing. It can be applied to more complex problems by encoding them in the environment through which sti...
H. Van Dyke Parunak, Theodore C. Belding, Robert B...
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
14 years 23 days ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru
ICDT
2003
ACM
150views Database» more  ICDT 2003»
14 years 2 months ago
Bioinformatics Adventures in Database Research
Informatics has helped launch molecular biology into the genomic era. It appears certain that informatics will remain a major contributor to molecular biology in the post-genome er...
Jinyan Li, See-Kiong Ng, Limsoon Wong
TREC
2003
13 years 10 months ago
Knowledge-Based Access to the Bio-Medical Literature, Ontologically-Grounded Experiments for the TREC 2003 Genomics Track
The Tarragon Consulting team participated in the primary task of the TREC 2003 Genomics Track. We used a combination of knowledge-engineering and corpus analysis to construct sema...
Richard Tong, John Quackenbush, Mark Snuffin