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BMCBI
2006
103views more  BMCBI 2006»
13 years 11 months ago
Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequili
Background: The discovery of cis-regulatory motifs still remains a challenging task even though the number of sequenced genomes is constantly growing. Computational analyses using...
Kenneth W. Berendzen, Kurt Stüber, Klaus Hart...
SIGIR
2011
ACM
13 years 1 months ago
Ad hoc IR: not much room for improvement
Ranking function performance reached a plateau in 1994. The reason for this is investigated. First the performance of BM25 is measured as the proportion of queries satisfied on th...
Andrew Trotman, David Keeler
SIGMOD
2012
ACM
234views Database» more  SIGMOD 2012»
12 years 1 months ago
SOFIA SEARCH: a tool for automating related-work search
When working on a new project, researchers need to devote a significant amount of time and effort to surveying the relevant literature. This is required in order to gain experti...
Behzad Golshan, Theodoros Lappas, Evimaria Terzi
BMCBI
2008
128views more  BMCBI 2008»
13 years 11 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
ICDCS
2007
IEEE
14 years 5 months ago
STEP: Sequentiality and Thrashing Detection Based Prefetching to Improve Performance of Networked Storage Servers
State-of-the-art networked storage servers are equipped with increasingly powerful computing capability and large DRAM memory as storage caches. However, their contribution to the...
Shuang Liang, Song Jiang, Xiaodong Zhang