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    BMCBI
    2008
    129views more  BMCBI 2008»
    Motif-directed network component analysis for regulatory network inference
    13 years 8 months ago
    Motif-directed network component analysis for regulatory network inference
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    Background: Network Component Analysis (NCA) has shown its effectiveness in discovering regulators and inferring transcription factor activities (TFAs) when both microarray data a...
    Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Wan...
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    BMCBI
    2006
    146views more  BMCBI 2006»
    A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls
    13 years 8 months ago
    A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls
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    Background: Statistical comparison of peptide profiles in biomarker discovery requires fast, userfriendly software for high throughput data analysis. Important features are flexib...
    Mark K. Titulaer, Ivar Siccama, Lennard J. Dekker,...
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    BMCBI
    2011
    192views Artificial Intelligence» more  BMCBI 2011»
    A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression
    13 years 5 days ago
    A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression
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    Background: The analysis of gene expression from time series underpins many biological studies. Two basic forms of analysis recur for data of this type: removing inactive (quiet) ...
    Alfredo A. Kalaitzis, Neil D. Lawrence
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    BMCBI
    2008
    102views more  BMCBI 2008»
    Response projected clustering for direct association with physiological and clinical response data
    13 years 8 months ago
    Response projected clustering for direct association with physiological and clinical response data
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    Background: Microarray gene expression data are often analyzed together with corresponding physiological response and clinical metadata of biological subjects, e.g. patients'...
    Sung-Gon Yi, Taesung Park, Jae K. Lee
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    BMCBI
    2005
    121views more  BMCBI 2005»
    Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data
    13 years 8 months ago
    Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data
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    Background: A critical step in processing oligonucleotide microarray data is combining the information in multiple probes to produce a single number that best captures the express...
    Kerby Shedden, Wei Chen, Rork Kuick, Debashis Ghos...
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