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» A stochastic particle-based biological system simulator

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CORR
2009
Springer

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On the Interpretation of Delays in Delay Stochastic Simulation of Biological Systems

13 years 8 months ago

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Roberto Barbuti, Giulio Caravagna, Paolo Milazzo, ...

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CORR
2010
Springer

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On Designing Multicore-aware Simulators for Biological Systems

13 years 8 months ago

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The stochastic simulation of biological systems is an increasingly popular technique in bioinformatics. It often is an enlightening technique, which may however result in being com...

Marco Aldinucci, Mario Coppo, Ferruccio Damiani, M...

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CMSB
2007
Springer

77views Applied Computing» more CMSB 2007»

Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus

14 years 2 months ago

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This paper presents a simulation algorithm for the stochastic -calculus, designed for the efficient simulation of biological systems with large numbers of molecules. The cost of a ...

Andrew Phillips, Luca Cardelli

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CMSB
2007
Springer

94views Applied Computing» more CMSB 2007»

Stochastic Simulation of Biological Systems with Dynamical Compartment Structure

14 years 5 months ago