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» A structural approach to latency prediction
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GECCO
2007
Springer
154views Optimization» more  GECCO 2007»
14 years 1 months ago
A novel ab-initio genetic-based approach for protein folding prediction
In this paper, a model based on genetic algorithms for protein folding prediction is proposed. The most important features of the proposed approach are: i) Heuristic secondary str...
Sergio Raul Duarte Torres, David Camilo Becerra Ro...
JMLR
2006
115views more  JMLR 2006»
13 years 7 months ago
Structured Prediction, Dual Extragradient and Bregman Projections
We present a simple and scalable algorithm for maximum-margin estimation of structured output models, including an important class of Markov networks and combinatorial models. We ...
Benjamin Taskar, Simon Lacoste-Julien, Michael I. ...
CSB
2005
IEEE
117views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Protein Structure Prediction Using Physical-Based Global Optimization and Knowledge-Guided Fragment Packing
We describe a new method to predict the tertiary structure of new-fold proteins. Our two-phase approach combines the knowledge-based fragmentpacking with the minimization of a phy...
Jinhui Ding, Elizabeth Eskow, Nelson L. Max, Silvi...
JCISD
2002
63views more  JCISD 2002»
13 years 7 months ago
Prediction of Ultraviolet Spectral Absorbance Using Quantitative Structure-Property Relationships
High performance liquid chromatography (HPLC) with ultraviolet (UV) spectrophotometric detection is a common method for analyzing reaction products in organic chemistry. This proc...
William L. Fitch, Malcolm McGregor, Alan R. Katrit...
PRIB
2010
Springer
192views Bioinformatics» more  PRIB 2010»
13 years 6 months ago
Structured Output Prediction of Anti-cancer Drug Activity
We present a structured output prediction approach for classifying potential anti-cancer drugs. Our QSAR model takes as input a description of a molecule and predicts the activity...
Hongyu Su, Markus Heinonen, Juho Rousu