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» A study of query length
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BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
15 years 9 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
185
Voted
CPM
1998
Springer
209views Combinatorics» more  CPM 1998»
15 years 7 months ago
A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming
The approximate string matching problem is to find all locations at which a query of length m matches a substring of a text of length n with k-or-fewer differences. Simple and prac...
Gene Myers
132
Voted
SODA
2004
ACM
121views Algorithms» more  SODA 2004»
15 years 5 months ago
A characterization of easily testable induced subgraphs
Let H be a fixed graph on h vertices. We say that a graph G is induced H-free if it does not contain any induced copy of H. Let G be a graph on n vertices and suppose that at leas...
Noga Alon, Asaf Shapira
126
Voted
BMCBI
2006
116views more  BMCBI 2006»
15 years 3 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick
151
Voted
SCN
2010
Springer
187views Communications» more  SCN 2010»
15 years 2 months ago
Searching Keywords with Wildcards on Encrypted Data
Abstract. A hidden vector encryption scheme (HVE) is a derivation of identity-based encryption, where the public key is actually a vector over a certain alphabet. The decryption ke...
Saeed Sedghi, Peter van Liesdonk, Svetla Nikova, P...