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» A study of the uniqueness of source code
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BMCBI
2011
12 years 11 months ago
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Background: With next-generation sequencing technologies, experiments that were considered prohibitive only a few years ago are now possible. However, while these technologies hav...
Osvaldo Zagordi, Arnab Bhattacharya, Nicholas Erik...
BMCBI
2011
12 years 11 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
BMCBI
2011
12 years 11 months ago
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus ge
Background: Results of phylogenetic analysis are often visualized as phylogenetic trees. Such a tree can typically only include up to a few hundred sequences. When more than a few...
Jiajie Zhang, Amir Madany Mamlouk, Thomas Martinet...
ISSTA
2012
ACM
11 years 10 months ago
Cooperative types for controlling thread interference in Java
Multithreaded programs are notoriously prone to unintended interference between concurrent threads. To address this problem, we argue that yield annotations in the source code sho...
Jaeheon Yi, Tim Disney, Stephen N. Freund, Cormac ...
ICSE
2008
IEEE-ACM
14 years 8 months ago
Are fit tables really talking?: a series of experiments to understand whether fit tables are useful during evolution tasks
Test-driven software development tackles the problem of operationally defining the features to be implemented by means of test cases. This approach was recently ported to the earl...
Filippo Ricca, Massimiliano Di Penta, Marco Torchi...