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PDP
2008
IEEE
14 years 1 months ago
Out-of-Core Wavefront Computations with Reduced Synchronization
Matrix computation algorithms often exhibit dependencies between neighboring elements inside loop nests such that the frontier between computed elements and those to be computed w...
Pierre-Nicolas Clauss, Jens Gustedt, Fréd&e...
GCC
2007
Springer
14 years 1 months ago
Improving the Performance of MPI Applications over Computational Grid
The Message Passing Interface (MPI) is a standard in parallel computing, and can also be used as a highperformance programming model for Grid application development. How to execu...
Bo Song, Guangwen Yang, Qiming Fang
IPPS
2006
IEEE
14 years 1 months ago
On the performance of parallel normalized explicit preconditioned conjugate gradient type methods
A new class of parallel normalized preconditioned conjugate gradient type methods in conjunction with normalized approximate inverses algorithms, based on normalized approximate f...
George A. Gravvanis, Konstantinos M. Giannoutakis
BMCBI
2010
189views more  BMCBI 2010»
13 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
VECPAR
2004
Springer
14 years 24 days ago
Message Strip-Mining Heuristics for High Speed Networks
In this work we investigate how the compiler technique of message strip mining performs in practice on contemporary high performance networks. Message strip mining attempts to redu...
Costin Iancu, Parry Husbands, Wei Chen