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BIRD
2008
Springer
13 years 9 months ago
Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics
The thermodynamics of RNA-RNA interaction consists of two components: the energy necessary to make a potential binding region accessible, i.e., unpaired, and the energy gained from...
Ulrike Mückstein, Hakim Tafer, Stephan H. F. ...
BMCBI
2010
121views more  BMCBI 2010»
13 years 4 months ago
Computing DNA duplex instability profiles efficiently with a two-state model: trends of promoters and binding sites
Background: DNA instability profiles have been used recently for predicting the transcriptional start site and the location of core promoters, and to gain insight into promoter ac...
Miriam R. Kantorovitz, Zoi Rapti, Vladimir Gelev, ...
BMCBI
2005
169views more  BMCBI 2005»
13 years 7 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
ICFP
2001
ACM
14 years 7 months ago
Macros as Multi-Stage Computations: Type-Safe, Generative, Binding Macros in MacroML
With few exceptions, macros have traditionally been viewed as operations on syntax trees or even on plain strings. This view makes macros seem ad hoc, and is at odds with two desi...
Steven E. Ganz, Amr Sabry, Walid Taha
WAPCV
2007
Springer
14 years 1 months ago
Modeling the Dynamics of Feature Binding During Object-Selective Attention
We present a biologically plausible computational model for solving the visual feature binding problem. The binding problem appears to be due to the distributed nature of visual pr...
Albert L. Rothenstein, John K. Tsotsos