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BMCBI
2010
177views more  BMCBI 2010»
13 years 9 months ago
Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets
Background: Phylogenetic analysis can be used to divide a protein family into subfamilies in the absence of experimental information. Most phylogenetic analysis methods utilize mu...
Aydin Albayrak, Hasan H. Otu, Ugur O. Sezerman
CSB
2003
IEEE
14 years 2 months ago
A Probabilistic Model for Identifying Protein Names and their Name Boundaries
This paper proposes a method for identifying protein names in biomedical texts with an emphasis on detecting protein name boundaries. We use a probabilistic model which exploits s...
Kazuhiro Seki, Javed Mostafa
AIIA
2007
Springer
14 years 1 months ago
Advanced Tree-Based Kernels for Protein Classification
One of the aims of modern Bioinformatics is to discover the molecular mechanisms that rule the protein operation. This would allow us to understand the complex processes involved i...
Elisa Cilia, Alessandro Moschitti
IDEAL
2004
Springer
14 years 3 months ago
Prediction of Implicit Protein-Protein Interaction by Optimal Associative Feature Mining
Proteins are known to perform a biological function by interacting with other proteins or compounds. Since protein–protein interaction is intrinsic to most cellular processes, pr...
Jae-Hong Eom, Jeong Ho Chang, Byoung-Tak Zhang
JCB
2006
215views more  JCB 2006»
13 years 9 months ago
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e., segmentation con...
Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, V...