A Bayesian method for estimating the amino acid distributions in the states of a hidden Markov model (HMM) for a protein familyor the columns of a multiple alignment of that famil...
Michael Brown, Richard Hughey, Anders Krogh, I. Sa...
Abstract. Task-structured probabilistic input/output automata (taskPIOAs) are concurrent probabilistic automata that, among other things, have been used to provide a formal framewo...
Aaron D. Jaggard, Catherine Meadows, Michael Mislo...
Background: Small molecular cofactors or ligands play a crucial role in the proper functioning of cells. Accurate annotation of their target proteins and binding sites is required...
We present a global search technique for nding the global minimal conformation of a sequence in Dill's HP-lattice model5;6 . The HP-lattice model is a simpli ed model of prot...