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ICTAI
2008
IEEE
14 years 4 months ago
The System BioC for Reasoning about Biological Models in Action Language C
We elaborate upon the usage of action language C for representing and reasoning about biological models. First, we provide a simple extension of C allowing for variables and show ...
Steve Dworschak, Torsten Grote, Arne König, T...
CSB
2002
IEEE
109views Bioinformatics» more  CSB 2002»
14 years 2 months ago
Towards Automatic Clustering of Protein Sequences
Analyzing protein sequence data becomes increasingly important recently. Most previous work on this area has mainly focused on building classification models. In this paper, we i...
Jiong Yang, Wei Wang 0010
BMCBI
2010
83views more  BMCBI 2010»
13 years 9 months ago
An effective approach for generating a three-Cys2His2 zinc-finger-DNA complex model by docking
Background: Determination of protein-DNA complex structures with both NMR and X-ray crystallography remains challenging in many cases. High Ambiguity-Driven DOCKing (HADDOCK) is a...
Chun-Chi Chou, M. Rajasekaran, Chinpan Chen
BMCBI
2005
149views more  BMCBI 2005»
13 years 9 months ago
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional pre
Background: The PD-(D/E)XK nuclease superfamily, initially identified in type II restriction endonucleases and later in many enzymes involved in DNA recombination and repair, is o...
Jan Kosinski, Marcin Feder, Janusz M. Bujnicki
ISOLA
2010
Springer
13 years 7 months ago
Modeling and Reasoning about Service Behaviors and Their Compositions
Abstract. Service-oriented systems have recently emerged as context-independent component-based systems. Unlike components, services can be created, invoked, composed, and destroye...
Aida Causevic, Cristina Cerschi Seceleanu, Paul Pe...