Abstract— Costas array enumeration is an NP-complete problem with a highly parallelize-able solution. This paper examines the implementation of a solution to this problem on an F...
—We extend the definition of the Costas property to functions in the continuum, namely on intervals of the reals or the rationals, and argue that such functions can be used in t...
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
RNA structure prediction, or folding, is a computeintensive task that lies at the core of several search applications in bioinformatics. We begin to address the need for high-thro...
Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberla...
Wavefront algorithms, such as the Smith-Waterman algorithm, are commonly used in bioinformatics for exact local and global sequence alignment. These algorithms are highly computat...